Cortical organoid-derived models of the melanoma brain metastatic niche enable prioritization of cancer-targeting drugs

Cell Rep Methods. 2025 Dec 15;5(12):101236. doi: 10.1016/j.crmeth.2025.101236. Epub 2025 Nov 14.

Abstract

Effective systemic therapies against brain metastases are severely limited. To understand and target vulnerabilities of human metastases in a brain niche context, we developed reproducible melanoma brain metastasis (MBM) models for metastasis-integrating drug screening. We co-cultured A375 melanoma cells or tumor regional lymph node-derived disseminated cancer cells (DCCs) in close proximity with human induced pluripotent stem cell-derived cortical organoids (hCOs). In these, RNA sequencing revealed an upregulation of metastasis-associated features. First, A375 cells and DCCs were screened against an anti-cancer library containing 315 compounds. Hits were ranked by neurotoxicity, central nervous system permeation, and anti-DCC efficacy. Only a minority of hits effectively targeted A375-MBMs, with the first-in-class XPO1 inhibitor selinexor emerging as top hit. Selinexor also demonstrated efficacy in DCC-MBM models and low toxicity on hCOs, suggesting a promising therapeutic window in clinically applied doses. Collectively, the MBM model provides a tool for identifying candidate therapies counteracting metastatic progression.

Keywords: CP: cancer biology; CP: stem cell; XPO1; assay development; cortical organoids; disseminated cancer cells; drug discovery; high-throughput screening; melanoma brain metastases; personalized medicine; preclinical cancer model; selinexor.

MeSH terms

  • Antineoplastic Agents* / pharmacology
  • Antineoplastic Agents* / therapeutic use
  • Brain Neoplasms* / drug therapy
  • Brain Neoplasms* / pathology
  • Brain Neoplasms* / secondary
  • Cell Line, Tumor
  • Drug Screening Assays, Antitumor
  • Humans
  • Induced Pluripotent Stem Cells
  • Melanoma* / drug therapy
  • Melanoma* / pathology
  • Organoids* / drug effects
  • Organoids* / metabolism
  • Organoids* / pathology

Substances

  • Antineoplastic Agents