Thalamus-cortex interactions drive cell type-specific cortical development in human pluripotent stem cell-derived assembloids

Proc Natl Acad Sci U S A. 2025 Nov 25;122(47):e2506573122. doi: 10.1073/pnas.2506573122. Epub 2025 Nov 17.

Abstract

The thalamus is pivotal for the development and function of neural circuits in the cerebral cortex. However, how thalamus-cortex interactions influence human cortical development remains unknown primarily because of the inaccessibility of the human embryonic brain. Here, we demonstrate thalamus-dependent gene expression, circuit organization, and neural activity during corticogenesis using human thalamocortical assembloids (hThCAs). Human cortical (hCOs) and thalamic organoids derived from induced pluripotent stem cells exhibited region-specific gene expression and spontaneous neuronal activity. Upon the fusion of these organoids, hThCAs reconstructed reciprocal thalamus-cortex axonal projections and synaptic connections. Transcriptomic analysis revealed thalamus-dependent acceleration of cortical maturation, with upregulation of programs linked to axon development, subplate/cortical plate identity, and activity-regulated genes. Histological analysis showed expanded progenitor pools and increased deep-layer neurons within hThCAs. Wide-field Ca2+ imaging demonstrated that wave-like activity originated in the thalamic region and propagated to the cortical region. Furthermore, two-photon Ca2+ imaging of cortical neurons revealed that synchronous activity emerged exclusively in pyramidal tract neurons and corticothalamic neurons, whereas intratelencephalic neurons remain asynchronous, highlighting cell type-specific circuit integration within hThCAs. These synchronized events were absent in isolated hCOs or in cortico-cortical assembloids, underscoring the specificity of thalamic input. Our findings suggest that diffusible thalamic cues broadly enhance progenitor expansion, while long-range thalamic input organizes cell type-specific synchronous activity. This study demonstrates the thalamus-dependent acquisition of mature cortical phenotypes in a cell type-specific manner in hThCAs, establishing developmental mechanisms linking regional interactions and cell type-specific circuit specification.

Keywords: cell type; human brain; neural assembloid; neural circuit; synchronization.

MeSH terms

  • Cerebral Cortex* / cytology
  • Cerebral Cortex* / growth & development
  • Cerebral Cortex* / metabolism
  • Humans
  • Induced Pluripotent Stem Cells* / cytology
  • Induced Pluripotent Stem Cells* / metabolism
  • Neurogenesis
  • Neurons / cytology
  • Neurons / metabolism
  • Organoids / cytology
  • Organoids / metabolism
  • Pluripotent Stem Cells* / cytology
  • Thalamus* / cytology
  • Thalamus* / metabolism
  • Thalamus* / physiology