Defective HIV DNA genomes provide ancestral relevance critical for phylogenetic inference of reservoir dynamics

bioRxiv [Preprint]. 2025 Nov 14:2025.10.03.680205. doi: 10.1101/2025.10.03.680205.

Lauren E Droske^{1

2}, Andrea S Ramirez-Mata^{1

2}, Melanie N Cash^{1

2}, Jose Estrada^{1

2}, Stephen D Shank^{3

4}, Adam Browning⁵, Faezeh Rafiei⁵, Sergei L Kosakovsky Pond^{3

4}, Marco Salemi^{1

2}, Brittany Rife Magalis⁵

¹ University of Florida, Department of Pathology, Immunology, and Laboratory Medicine, Gainesville, 32610, USA.
² University of Florida, Emerging Pathogens Institute, Gainesville, 32610, USA.
³ Temple University, Department of Biology, Philadelphia, 19122, USA.
⁴ Temple University, Institute for Genomics and Evolutionary Medicine, Philadelphia, 19122, USA.
⁵ University of Louisville, Department of Biochemistry and Molecular Genetics, Louisville, KY, 40202, USA.

No abstract available

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