Nucleophosmin 1 lactylation in graft kidney induces ferroptotic trigger waves that exacerbate delayed graft function

Nat Commun. 2025 Dec 5;17(1):277. doi: 10.1038/s41467-025-66991-3.

Abstract

Ferroptotic waves aggravate kidney ischemia-reperfusion injury and drive delayed graft function (DGF). We demonstrate that elevated glycolysis and lactate production in graft kidney correlate with ferroptosis and functional impairment. A signaling axis composed of the long non-coding RNA IGIP-5, microRNA 670-3p, and lactate dehydrogenase A promotes lactate secretion from injured tubular cells, inducing lactylation and ferroptosis in neighboring cells and triggering ferroptotic waves. Lactylome profiling identifies that nucleophosmin 1 (NPM1), an epigenetic regulator, is lactylated at lysine 257 by the lactyltransferase AARS1. Suppressing NPM1 lactylation-via K257 mutation, AARS1 knockout, or taurochenodeoxycholic acid-upregulates SLC7A11 and inhibits ferroptosis. Mechanistically, lactylation stabilizes NPM1 by reducing MDM2-mediated ubiquitination and strengthens SLC7A11 repression, disrupting cystine metabolism. In mouse allografts, blocking lactate shuttle-mediated NPM1 lactylation prevents ferroptotic propagation and ameliorates graft function. Additionally, we develop an early prediction model for DGF using postoperative urinary lactate concentrations. These findings reveal a metabolic-epigenetic axis driving ferroptotic propagation and propose NPM1 lactylation as a therapeutic target for DGF.

MeSH terms

  • Animals
  • Delayed Graft Function* / genetics
  • Delayed Graft Function* / metabolism
  • Delayed Graft Function* / pathology
  • Glycolysis
  • Humans
  • Kidney Transplantation* / adverse effects
  • Kidney* / metabolism
  • Kidney* / pathology
  • Lactic Acid / metabolism
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Mice, Knockout
  • MicroRNAs / genetics
  • MicroRNAs / metabolism
  • Nuclear Proteins* / genetics
  • Nuclear Proteins* / metabolism
  • Nucleophosmin
  • RNA, Long Noncoding / genetics
  • RNA, Long Noncoding / metabolism
  • Reperfusion Injury / metabolism

Substances

  • Nucleophosmin
  • Npm1 protein, mouse
  • NPM1 protein, human
  • Nuclear Proteins
  • Lactic Acid
  • MicroRNAs
  • RNA, Long Noncoding