Ornithine lipids from Akkermansia muciniphila are dynamically modulated in colitis and shape macrophage inflammatory responses

Gut Microbes. 2025 Dec 31;17(1):2601376. doi: 10.1080/19490976.2025.2601376. Epub 2025 Dec 16.

Abstract

The gut microbiota is a key modulator of host immunity, in part through the production of structurally diverse and largely still uncharacterized bacterial lipids and metabolites with potential immunoregulatory properties. Using a gnotobiotic Oligo-Mouse-Microbiota (OMM12) mouse model infected with the Citrobacter rodentium pathogen, we investigated metabolomic changes associated with colitis. Untargeted metabolomics revealed an accumulation of host-derived lipids in the inflamed colon, while several bacterial lipid classes, including sphingolipids, glycerophospholipids, and fatty acyls were depleted. Among the bacterial lipids, ornithine-containing lipids (OLs) produced by Akkermansia muciniphila were significantly reduced during inflammation. Isolation, structural characterization, and chemical synthesis revealed OL 16:0/15:0 as a membrane-associated lipid from A. muciniphila. This lipid contains an L-ornithine head group, with its α-amino group forming an amide bond with 3(R)-hydroxypalmitic acid, while the 3(R)-hydroxyl position is esterified with pentadecanoic acid. Functional studies showed that macrophages internalize and partially metabolize OL 16:0/15:0 into Nα-(3-hydroxypalmitoyl)-L-ornithine and 3(R)-hydroxypalmitic acid. In LPS-stimulated macrophages, a 1:1 mixture of OL diastereomers (3R,S + 3S,S) reduced Il6 and Il1b gene expression and decreased IL-6 secretion, without triggering IL-1β release. Interestingly, this diastereomeric mixture exhibited an opposite effect to the natural (3R,S)-epimer, which selectively promoted IL-1β secretion in LPS-primed macrophages. These results uncover a possible stereoselective modulation of IL-1β production by bacterial OLs. Overall, OL 16:0/15:0 is dynamically regulated during inflammation and may play a role in the immunomodulation of host-microbiota interactions.

Keywords: IL-1β; Oligo-Mouse-Microbiota; Ornithine lipids; akkermansia muciniphila; citrobacter rodentium; ulcerative colitis.

MeSH terms

  • Akkermansia
  • Animals
  • Citrobacter rodentium / physiology
  • Colitis* / immunology
  • Colitis* / metabolism
  • Colitis* / microbiology
  • Colon / microbiology
  • Colon / pathology
  • Disease Models, Animal
  • Enterobacteriaceae Infections / immunology
  • Enterobacteriaceae Infections / microbiology
  • Gastrointestinal Microbiome
  • Inflammation
  • Interleukin-1beta / genetics
  • Interleukin-1beta / metabolism
  • Lipids* / chemistry
  • Lipids* / immunology
  • Macrophages* / immunology
  • Macrophages* / metabolism
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Ornithine* / chemistry
  • Ornithine* / metabolism

Substances

  • Ornithine
  • Lipids
  • Interleukin-1beta

Supplementary concepts

  • Akkermansia muciniphila