Dual developmental effects of ARX poly-alanine mutations on human cortical excitatory and inhibitory neurons

Cell Rep. 2026 Jan 27;45(1):116746. doi: 10.1016/j.celrep.2025.116746. Epub 2025 Dec 20.

Abstract

Infantile spasms (IS), a severe childhood epilepsy with an incidence of 1.6-4.5 per 10,000 live births, often lead to lifelong intellectual disability. Up to 5% of affected males carry mutations in the Aristaless-related homeobox (ARX) gene. The lack of human-specific models for developmental epilepsy limits progress, making organoids a promising alternative. We use human cortical organoids (COs) and ganglionic eminence organoids (GEOs) to model poly-alanine expansion (PAE) mutations in ARX. PAE mutations increase cortical progenitor proliferation and accelerate early cortical development. ARX expression is upregulated in patient-derived COs at 30 days in vitro (DIV), correlating with altered cell cycle gene expression. We observe enhanced, cell-autonomous interneuron migration, which is rescued by CXCR4 inhibition. ARXPAE assembloids exhibit early network hyperactivity. These findings highlight the utility of human brain organoids in uncovering ARXPAE-driven mechanisms and represent a critical step toward developing targeted therapies for IS and related developmental epilepsies.

Keywords: ARX; CP: Developmental biology; CP: Neuroscience; brain development; epilepsy; interneuron migration; organoids; poly-alanine expansion.

MeSH terms

  • Cell Movement
  • Cell Proliferation
  • Cerebral Cortex* / metabolism
  • Cerebral Cortex* / pathology
  • Homeodomain Proteins* / genetics
  • Homeodomain Proteins* / metabolism
  • Humans
  • Interneurons / metabolism
  • Male
  • Mutation* / genetics
  • Neurons* / metabolism
  • Organoids / metabolism
  • Peptides* / genetics
  • Peptides* / metabolism
  • Receptors, CXCR4 / antagonists & inhibitors
  • Receptors, CXCR4 / metabolism
  • Spasms, Infantile / genetics
  • Spasms, Infantile / pathology
  • Transcription Factors* / genetics
  • Transcription Factors* / metabolism

Substances

  • ARX protein, human
  • Homeodomain Proteins
  • polyalanine
  • Transcription Factors
  • Peptides
  • Receptors, CXCR4