Deep learning-based MRI model for predicting P53-mutated hepatocellular carcinoma

BMC Med Imaging. 2025 Dec 22;25(1):506. doi: 10.1186/s12880-025-02045-w.

Abstract

Background: The P53-mutated Hepatocellular Carcinoma (HCC) is an aggressive variant associated with vascular endothelial growth factor (VEGF) overexpression and increased microvascular density. This study aimed to develop an MRI-based deep learning model for predicting P53-mutated HCC.

Methods: A total of 312 HCC patients who underwent gadolinium-enhanced MRI and were pathologically confirmed between January 2018 and December 2023 were retrospectively enrolled. Participants were randomly divided into training and test dataset at an 8:2 ratio. We developed an EfficientNetV2-based deep learning model, constructing arterial phase (AP) model, portal venous phase (VP), T2-weighted imaging (T2WI), hepatobiliary phase (HBP) single-sequence model, and combined models to predict P53 mutation status. Model performance was evaluated using the area under the curve (AUC), accuracy, sensitivity, specificity, precision, and F1 score as metrics. Differences in AUC values were compared using Delong's test.

Results: A total of 312 pathologically confirmed HCC patients (age: 56 ± 9 years; male = 240) were included, with a training dataset (n = 249) and test dataset (n = 63).Among single-sequence models, the HBP model demonstrated superior diagnostic performance (AUC = 0.715) compared to T2WI, AP, and VP models. The multiphase combined model (T2WI + AP + VP) significantly outperformed single-sequence models, achieving AUCs of 0.982 (95% CI: 0.959-1.000) in the training dataset and 0.914 (95% CI: 0.819-1.000) in the test dataset. However, incorporating the HBP sequence into the combined model (T2WI + AP + VP + HBP) did not further improve diagnostic performance (P > 0.05).

Advances in knowledge: The combined model incorporating AP, VP, T2WI, and HBP sequences demonstrated numerically highest performance in predicting P53-mutated HCC.

Keywords: Deep learning; Hepatocellular carcinoma; Magnetic resonance imaging; P53.

MeSH terms

  • Adult
  • Aged
  • Carcinoma, Hepatocellular* / diagnostic imaging
  • Carcinoma, Hepatocellular* / genetics
  • Deep Learning*
  • Female
  • Humans
  • Liver Neoplasms* / diagnostic imaging
  • Liver Neoplasms* / genetics
  • Magnetic Resonance Imaging* / methods
  • Male
  • Middle Aged
  • Mutation
  • Retrospective Studies
  • Sensitivity and Specificity
  • Tumor Suppressor Protein p53* / genetics

Substances

  • Tumor Suppressor Protein p53
  • TP53 protein, human