Extracellular matrix proteolysis maintains synapse plasticity during brain development

Nat Neurosci. 2026 Mar;29(3):567-580. doi: 10.1038/s41593-025-02153-4. Epub 2025 Dec 22.

Abstract

The extracellular matrix (ECM) regulates synaptic plasticity via mechanisms that are still being defined and have been studied predominantly in adulthood. Here, using live imaging of excitatory synapses in zebrafish hindbrain, we observed a bimodal distribution of short-lived (dynamic) and longer-lived (stable) synapses. Disruption of ECM via digestion or brevican deletion destabilized dynamic synapses and led to decreased synapse density. Conversely, loss of matrix metalloproteinase 14 (MMP14) led to accumulation of brevican and increased the lifetime of the dynamic synapse pool without affecting the stable synapse pool, resulting in increased overall synapse density. Microglial MMP14 was essential to these effects in both fish and human induced pluripotent stem cell-derived cultures. Both MMP14 and brevican were required for experience-dependent synapse plasticity in a motor learning assay. These data, complemented by mathematical modeling, define an essential role of ECM remodeling in maintaining a dynamic subset of synapses during brain development.

MeSH terms

  • Animals
  • Animals, Genetically Modified
  • Brain* / growth & development
  • Brain* / metabolism
  • Brevican / metabolism
  • Extracellular Matrix* / metabolism
  • Humans
  • Induced Pluripotent Stem Cells
  • Matrix Metalloproteinase 14 / genetics
  • Matrix Metalloproteinase 14 / metabolism
  • Neuronal Plasticity* / physiology
  • Proteolysis
  • Synapses* / metabolism
  • Synapses* / physiology
  • Zebrafish
  • Zebrafish Proteins / genetics
  • Zebrafish Proteins / metabolism

Substances

  • Matrix Metalloproteinase 14
  • Brevican
  • Zebrafish Proteins