γδ T cell receptor recognition of CD1d in a lipid-independent manner

Nat Commun. 2025 Dec 29;17(1):926. doi: 10.1038/s41467-025-67653-0.

Abstract

The monomorphic antigen-presenting molecule CD1d presents lipid antigens to both αβ and γδ T cells. While type I natural killer T cells (NKT) display exquisite specificity for CD1d presenting α-galactosylceramide (α-GalCer), the extent of lipid specificity exhibited by CD1d-restricted γδ T cells remains unclear. Here, we demonstrate that human γδ T cell receptors (TCRs) can recognise CD1d in either a lipid-dependent or lipid-independent manner with weak to moderate affinity. Using small-angle X-Ray scattering, we find that γδ TCR-CD1d binding modality is conserved across distinct CD1d-restricted TCRs. In functional assays, CD1d γδ TCR affinity was a poor predictor of γδ T cell line activation. Moreover, CD1d presenting endogenous lipids was sufficient to stimulate T cell activation and induce γδ TCR-CD3 clustering and phosphorylation in a dose-dependent manner. Elongation of the γδ TCR-CD3 complex by the inclusion of the Cγ2 and Cγ3 -encoded constant domains perturbed cellular activation whilst maintaining the ability to form functional γδ TCR clusters. The crystal structure of a Vδ1 γδ+ TCR-CD1d complex showed that the γδ TCR sat atop of the CD1d antigen-binding cleft but made no contacts with the presented lipid antigen. These findings provide a molecular basis for lipid-independent CD1d recognition by γδ TCRs.

MeSH terms

  • Antigen Presentation
  • Antigens, CD1d* / chemistry
  • Antigens, CD1d* / immunology
  • Antigens, CD1d* / metabolism
  • CD3 Complex / immunology
  • CD3 Complex / metabolism
  • Crystallography, X-Ray
  • Galactosylceramides / immunology
  • Galactosylceramides / metabolism
  • Humans
  • Lipids* / chemistry
  • Lipids* / immunology
  • Lymphocyte Activation / immunology
  • Natural Killer T-Cells / immunology
  • Protein Binding
  • Receptors, Antigen, T-Cell, gamma-delta* / chemistry
  • Receptors, Antigen, T-Cell, gamma-delta* / genetics
  • Receptors, Antigen, T-Cell, gamma-delta* / immunology
  • Receptors, Antigen, T-Cell, gamma-delta* / metabolism

Substances

  • Receptors, Antigen, T-Cell, gamma-delta
  • Antigens, CD1d
  • CD1D protein, human
  • Galactosylceramides
  • alpha-galactosylceramide
  • CD3 Complex
  • Lipids