Sialylated porphyrins optimized as anti-infective agents against SARS-CoV-2 variants

Bioorg Chem. 2026 Mar:170:109519. doi: 10.1016/j.bioorg.2026.109519. Epub 2026 Jan 23.

Abstract

Anti-adhesion strategies based on multivalent glycosylated molecules have emerged as promising antiviral tools to block early stages of viral infection. Herein, we report the design, synthesis, and evaluation of a series of porphyrin-based glycoclusters bearing sialic acid (SA) or 9-O-acetyl SA units, connected via linkers of varying length, polarity and rigidity. Their ability to inhibit virus-host cell interaction was assessed against wild-type, Alpha, Delta, JN.1 and KP.3 pseudotyped SARS-CoV-2 variants spanning the virus's evolutionary trajectory. The same inhibition pattern was measured with lived SARS-CoV-2 Delta variant. Although a small erosion of the SA affinity for the spike protein could be observed over the variants, all glycoclusters displayed robust and broad-spectrum neutralizing activity, highlighting the conserved role of SA-mediated recognition. Porphyrins bearing 9Ac-SA always displayed slightly better anti-effective properties than their SA counterparts. The engineering of the linkers distributing the SA ligands to the porphyrin central core proved successful as it could decrease the IC50's up to 4 times. The best optimized tetrameric inhibitors displayed a 60-fold enhanced activity compared to their monomers (15-fold per ligand). This work contributes both to the development and the improvement of antiviral agents and to a better understanding of viral evolution that drives SARS-CoV-2 infection.

Keywords: Antivirals; Covid-19; Glycoclusters; Multivalency; Sialic acid; Variants of concern.

MeSH terms

  • Antiviral Agents* / chemical synthesis
  • Antiviral Agents* / chemistry
  • Antiviral Agents* / pharmacology
  • COVID-19 / virology
  • COVID-19 Drug Treatment*
  • Humans
  • Microbial Sensitivity Tests
  • N-Acetylneuraminic Acid* / chemistry
  • N-Acetylneuraminic Acid* / pharmacology
  • Porphyrins* / chemical synthesis
  • Porphyrins* / chemistry
  • Porphyrins* / pharmacology
  • SARS-CoV-2* / drug effects
  • Spike Glycoprotein, Coronavirus / metabolism
  • Structure-Activity Relationship

Substances

  • Porphyrins
  • Antiviral Agents
  • Spike Glycoprotein, Coronavirus
  • N-Acetylneuraminic Acid
  • spike protein, SARS-CoV-2

Supplementary concepts

  • SARS-CoV-2 variants