Purpose: This study aims to develop and evaluate a fully automated deep learning-driven postprocessing pipeline for multiparametric renal MRI, enabling accurate kidney alignment, segmentation, and quantitative feature extraction within a single efficient workflow.
Methods: Our method has three main stages. First, a segmentation network delineates renal structures in high-contrast images. Next, a deep learning-based pairwise image registration algorithm maps the multiparametric image series to a common target and transfers the predicted annotations between the multiparametric images. Finally, clinically relevant quantitative parameters are extracted through region-specific assessment of renal structure and function based on the aligned and segmented multiparametric data. We used five-fold cross-validation to compare the segmentation outcomes and extracted features with manual analyses in 24 patients with prostate cancer or neuroendocrine tumors and 10 healthy subjects, each undergoing repeated scans.
Results: Our automated pipeline achieved high agreement with expert kidney segmentation while delivering significant alignment improvements through registration. Volumetric analysis showed a strong correlation (r 0.9) with manual results, and feature extraction demonstrated high intraclass correlation coefficients with minimal bias. The complete processing pipeline, encompassing coregistration, segmentation, and feature extraction, required approximately 15 s per scan from raw input to final quantitative output.
Conclusion: The study establishes a reliable automated pipeline for renal multiparametric MRI postprocessing. The achieved accuracy and efficiency can support improved diagnosis and treatment planning for patients with kidney disease.
Keywords: contrastive learning; deep learning; image registration; multiparametric renal MRI; segmentation.
© 2026 The Author(s). Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.