A deep learning-based computer-aided determination method for dominant follicle identification and antral follicle count in pelvic MRI images

Biomed Eng Online. 2026 Feb 20;25(1):37. doi: 10.1186/s12938-026-01518-5.

Abstract

Object: To develop and evaluate a multi-stage computer-aided determination (CAD) method for automated antral follicle count (AFC) and dominant follicle identification using pelvic magnetic resonance imaging (MRI), aiming to overcome the limitations of MRI-based follicular analysis, including high annotation cost and dependence on manual interpretation.

Materials and methods: A total of 417 T2-weighted MRI slices from 124 patients were selected by radiologists, ensuring ovarian visibility and excluding poor quality images. The proposed CAD method incorporates a You Only Look Once version 11 detection model, which accurately selects MRI slices containing ovarian structures. This is followed by LCR-UNet, a novel segmentation model that integrates a lightweight atrous spatial pyramid pooling module and a cascaded decoder (CR-decoder) with channel shuffle convolutional block and residual block.

Results: The model achieved a Dice similarity coefficient of 0.8571 for follicle segmentation on MRI images. Based on pixel area ranking and ellipse fitting, dominant follicle identification reached an accuracy of 92.86% and an F1-score of 0.8929. Additionally, size-based filtering enabled automated counting of antral follicles with a precision of 82.91%.

Discussion: The proposed CAD method approaches the performance of experienced radiologists while reducing manual workload, offering a reliable tool for ovarian reserve and fertility assessment.

Keywords: Antral follicle count; Computer-aided determination; Deep learning; Dominant follicle; Magnetic resonance imaging.

MeSH terms

  • Adult
  • Deep Learning*
  • Female
  • Humans
  • Image Processing, Computer-Assisted* / methods
  • Magnetic Resonance Imaging*
  • Ovarian Follicle* / cytology
  • Ovarian Follicle* / diagnostic imaging
  • Pelvis* / diagnostic imaging