SATB2 Mediates H3K9 Delactylation by Recruiting HDAC3 to Repress LCN2 and Inhibit Lung Tumor Growth and Metastasis

Adv Sci (Weinh). 2026 Apr;13(19):e22996. doi: 10.1002/advs.202522996. Epub 2026 Feb 25.

Abstract

Lung cancer remains a leading cause for global cancer-related mortality, with therapeutic resistance and metastasis posing major clinical challenges. The special AT-rich sequence-binding protein 2 (SATB2) is a well-established tumor suppressor in NSCLC, but its downstream epigenetic and metabolic regulatory mechanisms remain largely unclear. Here, we demonstrate that SATB2 exerts tumor-suppressive effects by impairing NSCLC cell proliferation, migration, invasion, and EMT. Mechanistically, SATB2 functions as a negative regulator of global histone lactylation, with a specific role in reducing histone H3 lysine 9 lactylation (H3K9la)-a previously uncharacterized histone mark in NSCLC. Through integrated multi-omics analyses (RNA-seq and H3K9la-specific CUT&Tag), we identified Lipocalin-2 (LCN2), an oncoprotein, as a critical downstream target of the SATB2-H3K9la axis. SATB2 is able to bind LCN2 promoter and recruit histone deacetylase 3 (HDAC3) via its N-terminal domain, catalyzing H3K9 delactylation to repress LCN2 transcription. Exogenous lactate reversed SATB2-mediated H3K9la and LCN2 suppression, restoring oncogenic phenotypes. In vivo, SATB2 overexpression inhibited xenograft tumor growth and lung metastasis, while LCN2 overexpression rescued these suppressive effects. Our findings uncover a novel epigenetic-metabolic crosstalk pathway in NSCLC, providing new insights into the molecular mechanisms of SATB2-mediated tumor suppression and potential therapeutic targets for NSCLC.

Keywords: H3K9 delactylation; HDAC3; LCN2; SATB2; lung cancer.

MeSH terms

  • Animals
  • Carcinoma, Non-Small-Cell Lung* / genetics
  • Carcinoma, Non-Small-Cell Lung* / metabolism
  • Carcinoma, Non-Small-Cell Lung* / pathology
  • Cell Line, Tumor
  • Cell Proliferation / genetics
  • Gene Expression Regulation, Neoplastic
  • Histone Deacetylase 3
  • Histone Deacetylases* / genetics
  • Histone Deacetylases* / metabolism
  • Histones* / genetics
  • Histones* / metabolism
  • Humans
  • Lipocalin-2* / genetics
  • Lipocalin-2* / metabolism
  • Lung Neoplasms* / genetics
  • Lung Neoplasms* / metabolism
  • Lung Neoplasms* / pathology
  • Matrix Attachment Region Binding Proteins* / genetics
  • Matrix Attachment Region Binding Proteins* / metabolism
  • Mice
  • Neoplasm Metastasis
  • Transcription Factors* / genetics
  • Transcription Factors* / metabolism

Substances

  • Matrix Attachment Region Binding Proteins
  • Histone Deacetylase 3
  • Lipocalin-2
  • Histone Deacetylases
  • SATB2 protein, human
  • Transcription Factors
  • Histones
  • LCN2 protein, human