HIV-1-encoded circular RNA enhances viral transcription through Tat binding

Nat Microbiol. 2026 Apr;11(4):1008-1021. doi: 10.1038/s41564-026-02271-0. Epub 2026 Mar 13.

Abstract

Circular RNAs (circRNAs) are single-stranded RNAs that form a covalently closed loop without 5' and 3' ends. From their own genomes, RNA viruses can encode circRNAs that play important roles during infection, but whether this is the case for HIV remains unclear. Here we detect an HIV-1-encoded viral circRNA (termed circHIV) in plasma from 18 people living with HIV and in infected primary cells and T-cell lines using RT-qPCR and northern blot. We find that this viral circRNA is packaged within HIV-1 virions and binds to the HIV-1 Tat protein upon expression in cells, which enhances transcription from the viral promoter, as shown by RNA immunoprecipitation and in vitro pulldown assays. Our study sheds light on a previously overlooked component of HIV-1 transcription, revealing the ability of circRNAs to act as transcriptional regulators that drive viral pathogenesis.

MeSH terms

  • Cell Line
  • Gene Expression Regulation, Viral
  • HIV Infections* / virology
  • HIV-1* / genetics
  • HIV-1* / metabolism
  • Humans
  • Promoter Regions, Genetic
  • Protein Binding
  • RNA* / genetics
  • RNA* / metabolism
  • RNA, Circular
  • RNA, Viral* / blood
  • RNA, Viral* / genetics
  • RNA, Viral* / metabolism
  • Transcription, Genetic
  • Viral Transcription*
  • tat Gene Products, Human Immunodeficiency Virus* / genetics
  • tat Gene Products, Human Immunodeficiency Virus* / metabolism

Substances

  • RNA, Circular
  • tat Gene Products, Human Immunodeficiency Virus
  • RNA, Viral
  • RNA