Generation of Ucp1-ires-Cre knock-in mice to enhance specificity and efficiency of gene targeting in brown adipose tissue

Am J Physiol Endocrinol Metab. 2026 May 1;330(5):E675-E683. doi: 10.1152/ajpendo.00533.2025. Epub 2026 Mar 24.

Abstract

Brown adipose tissue (BAT) secretes cytokines that influence the function of other tissues. Given the widespread distribution of brown fat depots, we generated BAT-lacking (ΔBAT) mouse models by specifically eliminating brown adipocytes using the Cre-loxP system combined with a floxed-stop diphtheria toxin A (DTA) cassette. Uncoupling protein 1 (UCP1) is essential for BAT thermogenesis and exhibits a highly restricted expression pattern, so it was chosen to direct BAT-specific Cre recombinase expression. We used CRISPR-Cas9 to insert an ires-Cre sequence downstream of the UCP1 stop codon, developing the novel knock-in line, Ucp1-CreYH. Ucp1-CreYH and transgenic line TgUcp1-CreEvdr mouse (Ucp1-CreEvdr) were crossed with Ai14-tdTomato and floxed-CPEB2 mice to assess Cre specificity and efficiency. ΔBAT mice were then generated by crossing each Cre line with floxed-stop DTA mice, followed by assessments of locomotor activity, body weight, and glucose tolerance. Although both Cre lines showed cold-enhanced expression, Ucp1-CreEvdr exhibited considerably lower Cre levels in BAT compared with Ucp1-CreYH mice, leading to inefficient ablation of some floxed alleles, such as Cpeb2. Moreover, Ucp1-CreEvdr mice displayed nonspecific Cre expression, whereas neither line showed evidence of substantial autonomous Cre activity in BAT-resident macrophages. Consequently, ΔBATEvdr mice experienced off-target neuronal ablation, resulting in hyperactive locomotion and reduced body weight. Although ΔBATYH mice showed normal locomotor activity and body weight, they had a modest weight gain and altered glucose homeostasis only after high-fat-diet feeding. In conclusion, novel Ucp1-Cre knock-in mouse showed specificity and efficiency for gene manipulation in brown adipocytes, highlighting its application in generating BAT-specific knockout and BAT-depleted mouse models.NEW & NOTEWORTHY A novel Ucp1-CreYH knock-in mouse exhibits improved efficiency and specificity of Cre recombinase activity in brown adipose tissue (BAT) compared with the widely used Ucp1-CreEvdr line, which showed nonspecific Cre activity in many organs. A BAT-deprived mouse model, generated with this Cre line, showed normal locomotion and body weight, but altered body weight and glucose homeostasis after high-fat feeding, validating its use for BAT-specific gene manipulation.

Keywords: BAT-depleted mice; Ucp1; body weight; brown adipose tissue; glucose homeostasis.

MeSH terms

  • Adipose Tissue, Brown* / metabolism
  • Animals
  • CRISPR-Cas Systems
  • Female
  • Gene Knock-In Techniques* / methods
  • Gene Targeting* / methods
  • Integrases* / genetics
  • Integrases* / metabolism
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Mice, Transgenic
  • Thermogenesis / genetics
  • Uncoupling Protein 1* / genetics
  • Uncoupling Protein 1* / metabolism

Substances

  • Uncoupling Protein 1
  • Ucp1 protein, mouse
  • Integrases
  • Cre recombinase