Using Well-Defined DNA Nanostructures To Study the Influence of DNA Clustering and Presentation on SNA Cellular Uptake

Nano Lett. 2026 May 20;26(19):6412-6418. doi: 10.1021/acs.nanolett.6c00961. Epub 2026 May 4.

Abstract

Spherical nucleic acids (SNAs) are examples of how nucleic acid structures can impact important biological functions. Herein, we explore how well-defined DNA nanostructures assembled on the surface of preformed SNAs can influence important processes like cellular uptake. Three different DNA nanostructures, which vary in clustering and/or topology, were studied with three different cell lines (NIH-3T3, HaCaT, RAW 264.7). All three structures exhibited higher cellular uptake than conventional SNAs, with one structure (TX motif SNA) exhibiting a 5-fold increase after 4 h of incubation. Increased DNA clustering and DNA crossover numbers correlate with enhanced Ca2+ binding and, ultimately, higher uptake primarily through clathrin- and macropinocytosis-mediated pathways (caveolae-mediated pathways have been observed with traditional ssSNAs). Ca2+ content within SNA structures facilitates uptake by making the structure less negatively charged and increasing interactions with Ca2+-binding proteins. This work shows how structural manipulation of the SNA shell can control and optimize its biological function.

Keywords: DNA Nanotechnology; Nanomedicine.

MeSH terms

  • Animals
  • Calcium / chemistry
  • Calcium / metabolism
  • Cell Line
  • DNA* / chemistry
  • Humans
  • Mice
  • NIH 3T3 Cells
  • Nanostructures* / chemistry
  • RAW 264.7 Cells

Substances

  • DNA
  • Calcium