Discovery and Optimization of IRBM-Z-2, an Allosteric Zika Virus NS2B-NS3 Protease Inhibitor Exhibiting In Vivo Efficacy

J Med Chem. 2026 Jun 11;69(11):13492-13503. doi: 10.1021/acs.jmedchem.6c00476. Epub 2026 May 29.

Abstract

Zika virus is an increasing medical and socio-economic burden in (sub)tropical regions, with no effective treatments available. Previously, we identified a novel series of N-carbamoylsydnone imine derivatives as potent ZIKV NS2B-NS3 protease inhibitors through phenotypic antiviral screening. Here, we report the optimization of this series, leading to IRBM-Z-2, a nanomolar inhibitor active in both biochemical and cellular assays, exhibiting no cytotoxicity. IRBM-Z-2 demonstrates favorable oral bioavailability, low clearance, and strong prophylactic efficacy in mouse models of ZIKV infection. These results highlight IRBM-Z-2 as a promising therapeutic candidate against ZIKV and a potential foundation for developing broad-spectrum orthoflavirus agents.

MeSH terms

  • Animals
  • Antiviral Agents* / chemical synthesis
  • Antiviral Agents* / chemistry
  • Antiviral Agents* / pharmacokinetics
  • Antiviral Agents* / pharmacology
  • Antiviral Agents* / therapeutic use
  • DEAD-box RNA Helicases
  • Drug Discovery
  • Humans
  • Mice
  • Nucleoside-Triphosphatase
  • Protease Inhibitors* / chemical synthesis
  • Protease Inhibitors* / chemistry
  • Protease Inhibitors* / pharmacokinetics
  • Protease Inhibitors* / pharmacology
  • Protease Inhibitors* / therapeutic use
  • RNA Helicases / antagonists & inhibitors
  • RNA Helicases / metabolism
  • Serine Endopeptidases / metabolism
  • Structure-Activity Relationship
  • Viral Nonstructural Proteins* / antagonists & inhibitors
  • Viral Nonstructural Proteins* / metabolism
  • Viral Proteases
  • Zika Virus Infection / drug therapy
  • Zika Virus* / drug effects
  • Zika Virus* / enzymology

Substances

  • Viral Nonstructural Proteins
  • Antiviral Agents
  • DEAD-box RNA Helicases
  • Viral Proteases
  • Nucleoside-Triphosphatase
  • Protease Inhibitors
  • Serine Endopeptidases
  • NS3 protein, Zika virus
  • NS2B protein, flavivirus
  • RNA Helicases