Deletion analysis of the CAP-cAMP binding site of the Escherichia coli lactose promoter

Nucleic Acids Res. 1984 Jul 11;12(13):5449-64. doi: 10.1093/nar/12.13.5449.

Abstract

S1 nuclease was used to generate a series of deletions which extend into the CAP-cAMP binding site from upstream of the Escherichia coli lactose operon promoter (lacP). Deletion and insertion mutations were also created which changed the spacing region between the CAP-cAMP binding site and the lacP -35 region. The promoter activities of these mutations were compared by measuring the levels of beta-galactosidase gene expression in vivo. The results show that sequence information prior to 74 base pairs (-74) upstream from the transcription start site (designated as +1) is not necessary for the full activation of the lac promoter by the CAP-cAMP complex. However, the deletion which extends to the -71 position retains only one third of the promoter activity in the presence of the CAP-cAMP complex. Removal of one symmetrical element from the two fold symmetry in the CAP-cAMP binding site abolished the CAP-cAMP stimulation of the lac promoter. Spacer mutations which increase by one base pair or decrease by two base pairs the length of the spacing region between the CAP-cAMP binding site and the lacP -35 region drastically reduced the CAP-cAMP stimulation of the lac promoter. This suggests that the distance between the lac promoter transcription start site and CAP-cAMP binding site is crucial for the function of the lac promoter, despite the fact that this distance varies in other E. coli promoters positively regulated by CAP-cAMP. A deletion which extends to the -59 position results in a two fold enhanced expression of lac in the absence of CAP-cAMP. This is consistent with the existance of a competitive RNA polymerase binding site in this region which would normally act to inhibit RNA polymerase binding.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Carrier Proteins / genetics*
  • Chromosome Deletion*
  • Cyclic AMP / metabolism*
  • Cyclic AMP Receptor Protein*
  • DNA Restriction Enzymes
  • Escherichia coli / genetics*
  • Genes, Bacterial*
  • Lac Operon*
  • Mutation
  • Plasmids
  • Protein Binding

Substances

  • Carrier Proteins
  • Cyclic AMP Receptor Protein
  • Cyclic AMP
  • DNA Restriction Enzymes