Design of new photoaffinity labels for ribosomal peptidyltransferase

Biochemistry. 1978 Jan 10;17(1):94-101. doi: 10.1021/bi00594a013.

Abstract

The chemical syntheses of 6-azido-2'(3')-O-L-phenylalanylpurine ribonucleoside (4a), 2'(3')-O-(4-azido-L-phenylalanyl)adenosine (4b), and cytidylyl(3' leads to 5')-6-azido-2'(3')-O-L-phenylalanylpurine ribonucleoside (7) are described. 6-Azidopurine ribonucleoside 5'-triphosphate (10) was also synthesized starting from 6-methylmercaptopurine ribonucleoside. All of these compounds (4a, 4b, 7, and 10) are readily photolyzed by ultraviolet (UV) light. Compounds 4a, 4b, and 7 are active in the ribosomal peptidyltransferase-catalyzed release of the Ac-Phe residue from the Ac-Phe-tRNA-70S ribosome-poly(U) complex. It follows that the 6-azidopurine moiety of compounds 4a and 7, as well as the 4-azido-L-phenylalanine moiety of 4b, are recognized by the peptidyltransferase enzyme, and therefore these moieties are suggested for incorporation into tRNA as photoaffinity labeling reagents.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Acyltransferases*
  • Affinity Labels / chemical synthesis*
  • Kinetics
  • Magnetic Resonance Spectroscopy
  • Methods
  • Peptidyl Transferases*
  • Photolysis
  • Purine Nucleosides
  • Ribosomes / enzymology*
  • Spectrophotometry, Ultraviolet
  • Structure-Activity Relationship
  • Ultraviolet Rays

Substances

  • Affinity Labels
  • Purine Nucleosides
  • Acyltransferases
  • Peptidyl Transferases