Site on the vesicular stomatitis virus genome specifying polyadenylation and the end of the L gene mRNA

J Virol. 1980 May;34(2):550-9. doi: 10.1128/JVI.34.2.550-559.1980.

Abstract

The 5'-terminal nucleotide sequence from positions 50 to 130 of vesicular stomatitis virus RNA was determined indirectly by using a defective interfering particle RNA which contains covalently linked genomic minus and antigenomic plus sense RNAs. The last 18 nucleotides of the L gene coding for in the viral polymerase were identified and isolated by specific duplex formation between 5' terminally labeled oligonucleotides from a small single-stranded defective interfering particle RNA and L gene mRNA. The L gene ends at position 60 from the 5' terminus of the vesicular stomatitis genome. The data demonstrated that the first seven adenine residues in the polyadenylic acid tail of L gene mRNA may be coded for in the genome and suggested that the viral transcriptase itself may carry out polyadenylation, possibly by chattering at the uridine-rich sequence at the end of the L gene. Analysis of the 5'-terminal sequence of vesicular stomatitis virus genomic RNA revealed that it might fold into a complex secondary structure with possibly 62% of the bases paired.

MeSH terms

  • Base Sequence
  • Genes, Viral*
  • Nucleic Acid Conformation
  • Poly A / metabolism
  • RNA, Messenger / analysis
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism
  • RNA, Viral / analysis
  • RNA, Viral / genetics*
  • RNA, Viral / metabolism
  • Vesicular stomatitis Indiana virus / genetics*

Substances

  • RNA, Messenger
  • RNA, Viral
  • Poly A

Associated data

  • GENBANK/J02428
  • GENBANK/J02430
  • GENBANK/J02431
  • GENBANK/J02432
  • GENBANK/J02434
  • GENBANK/J02435
  • GENBANK/J02436
  • GENBANK/J02437
  • GENBANK/J02438
  • GENBANK/K00519
  • GENBANK/K00520
  • GENBANK/K00625
  • GENBANK/K01068
  • GENBANK/K01069
  • GENBANK/K01070
  • GENBANK/K01638
  • GENBANK/K01639