DNA sequence analysis of a mouse pro alpha 1 (I) procollagen gene: evidence for a mouse B1 element within the gene

Mol Cell Biol. 1982 Nov;2(11):1362-71. doi: 10.1128/mcb.2.11.1362-1371.1982.

Abstract

In a 3.8-kilobase mouse DNA sequence encoding amino acid sequences for the pro alpha 1(I) chain of type I procollagen, 14 coding sequences were identified which specify a sequence 95% homologous to amino acid residues 568 to 963 of the bovine alpha 1(I) chain. All of these coding sequences were flanked by appropriate splice junctions following the GT/AG rule. These observations suggest, but do not prove, that this pro alpha 1(I) gene is transcriptionally active. Of the 14 coding sequences, 7 were 54 base pairs in length, whereas the remainder were higher multiples of 54 base pairs. Nonrandom utilization of codons pertained throughout all of the coding sequences showing a preference (56%) for U in the wobble position. Two of the intervening sequences encoded imperfect vestiges of coding sequences which exhibited a codon preference different from that of the pro alpha 1(I) gene proper and were not flanked by splice junctions. One intervening sequence encoded a member of the mouse B1 family of middle repetitive sequences. It was flanked by 8-base-pair direct repeats and had a truncated A-rich region, suggesting that it may be a mobile element. Within this element were sequences which could function as a RNA polymerase III split promoter.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Codon
  • DNA Restriction Enzymes
  • DNA*
  • Genes*
  • Mice
  • Nucleic Acid Hybridization
  • Procollagen / genetics*
  • RNA Splicing
  • Repetitive Sequences, Nucleic Acid
  • Transcription, Genetic

Substances

  • Codon
  • Procollagen
  • DNA
  • DNA Restriction Enzymes

Associated data

  • GENBANK/M17491
  • GENBANK/M17492
  • GENBANK/M17493