The nucleotide sequence of 8 S RNA bound to preribosomal RNA of Novikoff hepatoma. The 5'-end of 8 S RNA is 5.8 S RNA

J Biol Chem. 1983 Jan 10;258(1):584-9.

Abstract

8 S RNA of Novikoff hepatoma was characterized by fingerprinting, sequencing gels, and by hybridization to rat ribosomal DNA clones. The data obtained show that 8 S RNA is 273 or 274 nucleotides long; ribosomal 5.8 S RNA is its 5'-terminal 156 nucleotides. All the post-transcriptional modifications found in 5.8 S rRNA were also found in 8 S RNA; no other modifications were found. The 3'-terminal 118 nucleotides were consistent with the adjoining internal transcribed spacer sequence in rDNA (Subrahmanyam, C. S., Cassidy, B., Busch, H., and Rothblum, L. (1982) Nucleic Acids Res. 10, 3667-3680). Based on its nucleolar localization, the finding that all the 8 S RNA is hydrogen-bonded to preribosomal RNA and its consistency in sequence to the cloned rat ribosomal DNA sequence, it appears that 8 S RNA is a relatively stable intermediate in the formation of 5.8 S rRNA from 45 S pre-rRNA. This stable intermediate RNA may be a useful substrate for studies on rRNA processing and for studies on eukaryotic rRNA-processing enzyme(s).

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • DNA / genetics
  • DNA, Ribosomal
  • Endoribonucleases
  • Liver Neoplasms, Experimental / analysis*
  • Molecular Weight
  • Nucleic Acid Conformation
  • Nucleic Acid Hybridization
  • RNA, Ribosomal / genetics
  • RNA, Ribosomal / isolation & purification*
  • Rats
  • Ribonuclease T1
  • Ribonuclease, Pancreatic

Substances

  • DNA, Ribosomal
  • RNA, Ribosomal
  • DNA
  • Endoribonucleases
  • Ribonuclease T1
  • Ribonuclease, Pancreatic

Associated data

  • GENBANK/K01592