Effect of threonylcarbamoyl modification (t6A) in yeast tRNA Arg III on codon-anticodon and anticodon-anticodon interactions. A thermodynamic and kinetic evaluation

Eur J Biochem. 1981 May;116(1):207-13. doi: 10.1111/j.1432-1033.1981.tb05320.x.

Abstract

The effect of N-[9-(beta-D-ribofuranosyl) purin-6-ylcarbamoyl]threonine (t6A) adjacent to anticodon U-C-U of yeast tRNA Arg III (where U is a modified U), compared to its unmodified adenosine counterpart, has been evaluated by three independent methods: (a) the polynucleotide-directed binding of tRNA on ribosomes, (b) the ribosome-free trinucleotide binding to the anticodon, (c) the anticodon-anticodon binding test. The results obtained by these three methods indicate a small but significant stabilization effect of t6A on the binding of yeast tRNA Arg III with (a) poly(A,G) in the presence of Escherichia coli ribosomes, (b) free A-G-A triplet, and (c) E. coli tRNA Ser V (anticodon G-G-A). We therefore conclude that the stabilization effect of t6A occurs on U x A and U x G base pairs adjacent to the 5' side of the modified nucleoside, most probably by stacking.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine / analogs & derivatives
  • Anticodon / metabolism*
  • Base Composition
  • Codon / metabolism*
  • Escherichia coli / metabolism*
  • Kinetics
  • Purine Nucleosides / metabolism*
  • RNA, Messenger / metabolism*
  • RNA, Transfer / metabolism*
  • RNA, Transfer, Amino Acyl / metabolism*
  • Ribosomes / metabolism
  • Saccharomyces cerevisiae / genetics
  • Thermodynamics
  • Threonine / analogs & derivatives*
  • Threonine / metabolism

Substances

  • Anticodon
  • Codon
  • Purine Nucleosides
  • RNA, Messenger
  • RNA, Transfer, Amino Acyl
  • N(6)-(N-threonylcarbonyl)adenosine
  • Threonine
  • RNA, Transfer
  • Adenosine