Chain flexibility and hydrodynamics of the B and Z forms of poly(dG-dC).poly(dG-dC)

Nucleic Acids Res. 1983 Mar 25;11(6):1919-30. doi: 10.1093/nar/11.6.1919.

Abstract

The solution properties of the B and Z forms of poly(dG-dC).poly(dG-dC) have been measured by static and dynamic laser light scattering. The radius of gyration, persistence length, translational and segmental diffusion coefficients, and the Rouse-Zimm parameters have been evaluated. The persistence length of the Z form determined at 3 M NaCl is about 200 nm compared to 84 and 61 nm respectively for the B forms of poly(dG-dC).poly(dG-dC), and calf thymus DNA, both determined at 0.1 M NaCl. The data on persistence length, diffusion coefficients and the Rouse-Zimm parameters indicate a large increase in the chain stiffness of Z DNA compared to the B form. These results are opposite to the ionic strength effects on random sequence native DNAs, for which the flexibility increases with ionic strength and levels off at about 1 M NaCl.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Cattle
  • DNA*
  • Molecular Weight
  • Nucleic Acid Conformation
  • Osmolar Concentration
  • Polydeoxyribonucleotides*
  • Structure-Activity Relationship
  • Thymus Gland

Substances

  • Polydeoxyribonucleotides
  • poly(dC-dG)
  • DNA