A DNA glycosylase from Escherichia coli that releases free urea from a polydeoxyribonucleotide containing fragments of base residues

Nucleic Acids Res. 1980 Dec 20;8(24):6199-211. doi: 10.1093/nar/8.24.6199.

Abstract

A poly (dA, [2-14C]dT) copolymer has been synthesized using terminal deoxynucleotidyltransferase. Treatment of the polydeoxyribonucleotide with potassium permanganate converts the thymine residues to urea and N-substituted urea derivatives, while the adenine residues are resistant to oxidation. This damaged polymer has been annealed with an equimolar amount of poly (dT) to generate a double-stranded polydeoxyribonucleotide containing scattered fragmented base residues, which are radioactively labeled selectively. On incubation of the latter with crude cell extracts from E. coli, free urea is released by a DNA glycosylase activity. The enzyme has been partly purified, and appears to be different from previously studied DNA glycosylase. It shows a strong preference for a double-stranded substrate, exhibits no cofactor requirement, and has a molecular weight of 20000 - 25000. Since fragmentation of pyrimidine residues is a major type of base lesion introduced in DNA by exposure to ionizing radiation, it seems likely this DNA glycosylase is active in repair of X-ray-induced lesions.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / metabolism
  • DNA Glycosylases
  • DNA Nucleotidylexotransferase / metabolism
  • Escherichia coli / enzymology*
  • Glycoside Hydrolases / metabolism*
  • Molecular Weight
  • Poly dA-dT / biosynthesis
  • Poly dA-dT / metabolism*
  • Polydeoxyribonucleotides / metabolism*
  • Potassium Permanganate
  • Substrate Specificity
  • Urea / metabolism*

Substances

  • Polydeoxyribonucleotides
  • Potassium Permanganate
  • Poly dA-dT
  • Urea
  • DNA
  • DNA Nucleotidylexotransferase
  • Glycoside Hydrolases
  • DNA Glycosylases