A novel RNA-binding motif in omnipotent suppressors of translation termination, ribosomal proteins and a ribosome modification enzyme?

Nucleic Acids Res. 1994 Jun 11;22(11):2166-7. doi: 10.1093/nar/22.11.2166.

Abstract

Using computer methods for database search, multiple alignment, protein sequence motif analysis and secondary structure prediction, a putative new RNA-binding motif was identified. The novel motif is conserved in yeast omnipotent translation termination suppressor SUP1, the related DOM34 protein and its pseudogene homologue; three groups of eukaryotic and archaeal ribosomal proteins, namely L30e, L7Ae/S6e and S12e; an uncharacterized Bacillus subtilis protein related to the L7A/S6e group; and Escherichia coli ribosomal protein modification enzyme RimK. We hypothesize that a new type of RNA-binding domain may be utilized to deliver additional activities to the ribosome.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Bacterial Proteins / chemistry
  • Escherichia coli / genetics
  • Fungal Proteins / chemistry
  • Humans
  • Molecular Sequence Data
  • Protein Biosynthesis
  • RNA / metabolism
  • RNA-Binding Proteins / chemistry*
  • Ribosomal Proteins / chemistry
  • Ribosomes / metabolism

Substances

  • Bacterial Proteins
  • Fungal Proteins
  • RNA-Binding Proteins
  • Ribosomal Proteins
  • RNA