In order to determine the presence of synaptic connectivity between fibres originating from a specific source and neurones with a known morphology and known fibre projection, we have introduced a method for electron microscopy that combines three techniques: retrograde fluorescent tracing, anterograde tracing using biotinylated dextran-amine and intracellular injection of Lucifer Yellow (LY) in lightly fixed brain slices. Neurones in the rat entorhinal cortex that project to the infralimbic cortex and that might be in synaptic contact with fibres originating in the dorsal subiculum served as a model. After surgical application of the tracers and a survival period enabling transport, the brain was fixed and vibratome slices 300 microns thick were prepared in which retrogradely labelled cells were intracellularly injected with LY. This substance and the transported biotinylated dextran-amine were converted into different electron-dense labels. First, LY immunocytochemistry was conducted, then followed by silver-gold enhancement of the immunoprecipitate. Subsequently, the tissue sections were treated with an avidin-biotin-horseradish peroxidase complex and subjected to a diaminobenzidine-peroxide reaction. This protocol resulted in labelling of biotinylated dextran-amine-positive fibres and terminals that could easily be differentiated from the LY-positive neuronal elements and also showed well preserved ultrastructural detail.