HnRNP L binds a cis-acting RNA sequence element that enables intron-dependent gene expression

Genes Dev. 1995 Jul 15;9(14):1766-80. doi: 10.1101/gad.9.14.1766.

Abstract

Most pre-mRNAs require an intron for efficient processing in higher eukaryotes. To test the hypothesis that intron-independent gene expression involves positive, cis-acting RNA sequence elements, we constructed chimeric genes in which various regions of the naturally intronless HSV-TK gene were inserted into an intronless variant of the highly intron-dependent human beta-globin gene. Using a transient transfection assay, we identified a 119-nucleotide sequence element contained within the transcribed region of the HSV-TK gene that enables efficient cytoplasmic accumulation of globin RNA in the absence of splicing. RNA UV-cross-linking assays indicated that a 68-kD protein present in nuclear extracts of HeLa and COS cells specifically binds to this HSV-TK sequence element. This 68-kD protein was found to cross-react with an antiserum specific to hnRNP L. Recombinant hnRNP L was shown to bind with high sequence specificity to this RNA sequence element. Analysis of substitution mutants in this element indicated that binding of hnRNP L correlates with accumulation of the RNA in the cytoplasm. Thus, we conclude that (1) hnRNP L binds in a sequence-specific manner to this RNA sequence element that enables intron-independent gene expression, and (2) intron-independent pre-mRNA processing and transport involves sequence-specific RNA-protein interactions between cis-acting RNA sequence elements and proteins such as hnRNP L. This sequence element may be of general use for the efficient expression of cDNA versions of intron-dependent genes.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Cell Line
  • Chimera / genetics
  • DNA Primers / genetics
  • DNA, Complementary / genetics
  • Enhancer Elements, Genetic
  • Gene Expression*
  • Globins / genetics
  • Heterogeneous-Nuclear Ribonucleoprotein L
  • Heterogeneous-Nuclear Ribonucleoproteins
  • Humans
  • Introns
  • Molecular Sequence Data
  • Multigene Family
  • Mutation
  • RNA / genetics*
  • RNA / metabolism*
  • RNA Precursors / genetics
  • RNA Precursors / metabolism
  • RNA Splicing / genetics
  • Ribonucleoproteins / metabolism*
  • Simplexvirus / enzymology
  • Simplexvirus / genetics
  • Thymidine Kinase / genetics

Substances

  • DNA Primers
  • DNA, Complementary
  • Heterogeneous-Nuclear Ribonucleoprotein L
  • Heterogeneous-Nuclear Ribonucleoproteins
  • RNA Precursors
  • Ribonucleoproteins
  • RNA
  • Globins
  • Thymidine Kinase