2.1 A resolution refined structure of a TATA box-binding protein (TBP)

Nat Struct Biol. 1994 Sep;1(9):621-37. doi: 10.1038/nsb0994-621.

Abstract

The three-dimensional structure of a TATA box-binding protein (TBP2) from Arabidopsis thaliana has been refined at 2.1 A resolution. TBPs are general eukaryotic transcription factors that participate in initiation of RNA synthesis by all three eukaryotic RNA polymerases. The carboxy-terminal portion of TBP is a unique DNA-binding motif/protein fold, adopting a highly symmetric alpha/beta structure that resembles a molecular saddle with two stirrup-like loops. A ten-stranded, antiparallel beta-sheet provides a concave surface for recognizing class II nuclear gene promoters, while the four amphipathic alpha-helices on the convex surface are available for interaction with other transcription factors. The myriad interactions of TBP2 with components of the transcription machinery are discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Arabidopsis / chemistry
  • Crystallography, X-Ray
  • DNA-Binding Proteins / chemistry*
  • DNA-Directed RNA Polymerases / chemistry
  • Fungal Proteins / chemistry
  • Molecular Sequence Data
  • Plants / chemistry
  • Proline / chemistry
  • Protein Conformation
  • Saccharomyces cerevisiae Proteins*
  • Sequence Homology, Amino Acid
  • Solvents / chemistry
  • TATA Box*
  • TATA-Box Binding Protein
  • Trans-Activators / chemistry
  • Transcription Factors / chemistry*
  • Transcriptional Activation

Substances

  • DNA-Binding Proteins
  • Fungal Proteins
  • SPT3 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • Solvents
  • TATA-Box Binding Protein
  • Trans-Activators
  • Transcription Factors
  • Proline
  • DNA-Directed RNA Polymerases

Associated data

  • GENBANK/M64861