Determination of a 21548 bp nucleotide sequence around the 24 degrees region of the Bacillus subtilis chromosome

Microbiology (Reading). 1995 Feb:141 ( Pt 2):269-75. doi: 10.1099/13500872-141-2-269.

Abstract

A 21548 bp nucleotide sequence around the 24 degrees region of the Bacillus subtilis chromosome, located 306 kb downstream from the zero point of the physical map, was determined. Twenty-one putative ORFs were identified: two ORFs (Orf1 and Orf20) were consistent with the nucleotide and amino acid sequence of B. subtilis OrfJ, whose function is not known, and Pcp, respectively; four were found to display significant similarities to known proteins in data banks, i.e. 5-keto-3-deoxyglucarate dehydratase (Orf2), aldehyde dehydrogenase (Orf3) and two glucarate dehydratases (Orf4 and 5); three had considerable similarity to the sensor-regulator proteins of bacterial two-component signal transduction systems (Orf1, 11 and 12); two had considerably high levels of similarity to parts of known proteins (Orf13 and 19); and five showed low levels of similarity to known proteins in the data banks. The remaining six ORFs showed no similarity to known proteins.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aldehyde Dehydrogenase / genetics
  • Amino Acid Sequence
  • Bacillus subtilis / genetics*
  • Base Sequence
  • Chromosomes, Bacterial / genetics*
  • Cloning, Molecular
  • DNA, Bacterial / genetics*
  • Data Collection
  • Hydro-Lyases / genetics
  • Molecular Sequence Data
  • Open Reading Frames / genetics
  • Restriction Mapping
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid

Substances

  • DNA, Bacterial
  • Aldehyde Dehydrogenase
  • Hydro-Lyases
  • glucarate dehydratase

Associated data

  • GENBANK/D16251
  • GENBANK/D30808
  • GENBANK/L20573
  • GENBANK/L20934
  • GENBANK/L22503
  • GENBANK/M69160