Acid-base chemical mechanism of aspartase from Hafnia alvei

Arch Biochem Biophys. 1995 Jun 20;320(1):115-22. doi: 10.1006/abbi.1995.1348.

Abstract

An acid-base chemical mechanism is proposed for Hafnia alvei aspartase in which a proton is abstracted from C-3 of the monoanionic form of L-aspartate by an enzyme general base with a pK of 6.3-6.6 in the absence and presence of Mg2+. The resulting carbanion is presumably stabilized by delocalization of electrons into the beta-carboxyl with the assistance of a protonated enzyme group in the vicinity of the beta-carboxyl. Ammonia is then expelled with the assistance of a general acid group that traps an initially expelled NH3 as the final NH4+ product. In agreement with the function of the general acid group, potassium, an analog of NH4+, binds optimally when the group is unprotonated. The pK for the general acid is about 7 in the absence of Mg2+, but is increased by about a pH unit in the presence of Mg2+. Since the same pK values are observed in the pKi(succinate) and V/K pH profile, both enzyme groups must be in their optimum protonation state for efficient binding of reactant in the presence of Mg2+. At the end of a catalytic cycle, both the general base and general acid groups are in a protonation state opposite that in which they started when aspartate was bound. The presence of Mg2+ causes a pH-dependent activation of aspartase exhibited as a partial change in the V and V/Kasp pH profiles. When the aspartase reaction is run in D2O to greater than 50% completion no deuterium is found in the remaining aspartate, indicating that the site is inaccessible to solvent during the catalytic cycle.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Acid-Base Equilibrium
  • Aspartate Ammonia-Lyase / chemistry*
  • Aspartic Acid / metabolism
  • Enterobacteriaceae / enzymology*
  • Escherichia coli / enzymology
  • Fumarates / metabolism
  • Hydrogen-Ion Concentration
  • Kinetics
  • Magnesium / pharmacology
  • Models, Chemical
  • Succinates / metabolism
  • Succinic Acid

Substances

  • Fumarates
  • Succinates
  • Aspartic Acid
  • fumaric acid
  • Succinic Acid
  • Aspartate Ammonia-Lyase
  • Magnesium