Expression, purification, and functional characterization of the carboxyl-terminal domain fragment of bacteriophage 434 repressor

J Bacteriol. 1994 Nov;176(22):6907-14. doi: 10.1128/jb.176.22.6907-6914.1994.

Abstract

The repressor protein of bacteriophage 434 binds to DNA as a dimer of identical subunits. Its strong dimerization is mediated by the carboxyl-terminal domain. Cooperative interactions between the C-terminal domains of two repressor dimers bound at adjacent sites can stabilize protein-DNA complexes formed with low-affinity binding sites. We have constructed a plasmid, pCT1, which directs the overproduction of the carboxyl-terminal domain of 434 repressor. The protein encoded by this plasmid is called CT-1. Cells transformed with pCT1 are unable to be lysogenized by wild-type 434 phage, whereas control cells are lysogenized at an efficiency of 1 to 5%. The CT-1-mediated interference with lysogen formation presumably results from formation of heteromeric complexes between the phage-encoded repressor and the plasmid-encoded carboxyl-terminal domain fragment. These heteromers are unable to bind DNA and thereby inhibit the repressor's activity in promoting lysogen formation. Two lines of evidence support this conclusion. First, DNase I footprinting experiments show that at a 2:1 ratio of CT-1 to intact 434 repressor, purified CT-1 protein prevents the formation of complexes between 434 repressor and its OR1 binding site. Second, cross-linking experiments reveal that only a specific heterodimeric complex forms between CT-1 and intact 434 repressor. This latter observation indicates that CT-1 interferes with 434 repressor-operator complex formation by preventing dimerization and not by altering the conformation of the DNA-bound repressor dimer. Our other evidence is also consistent with this suggestion. We have used deletion analysis in an attempt to define the region which mediates the 434 repressor-CT-1 interaction. CT-1 proteins which have more than the last 14 amino acids removed are unable to interfere with 434 repressor action in vivo.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Coliphages*
  • DNA Mutational Analysis
  • Escherichia coli
  • Lysogeny / genetics
  • Molecular Sequence Data
  • Operator Regions, Genetic
  • Peptide Fragments / biosynthesis*
  • Peptide Fragments / genetics
  • Plasmids / genetics
  • Plasmids / metabolism*
  • Protein Binding
  • Repressor Proteins / biosynthesis*
  • Repressor Proteins / genetics
  • Sequence Deletion
  • Sequence Homology, Amino Acid
  • Transformation, Genetic
  • Viral Proteins

Substances

  • 434-repressor protein, Bacteriophage 434
  • Peptide Fragments
  • Repressor Proteins
  • Viral Proteins