Strategic manipulation of the substrate specificity of Saccharomyces cerevisiae flavocytochrome b2

Biochem J. 1994 Aug 1;301 ( Pt 3)(Pt 3):829-34. doi: 10.1042/bj3010829.

Abstract

Flavocytochrome b2 from Saccharomyces cerevisiae acts physiologically as an L-lactate dehydrogenase. Although L-lactate is its primary substrate, the enzyme is also able to utilize a variety of other (S)-2-hydroxy acids. Structural studies and sequence comparisons with several related flavoenzymes have identified the key active-site residues required for catalysis. However, the residues Ala-198 and Leu-230, found in the X-ray-crystal structure to be in contact with the substrate methyl group, are not well conserved. We propose that the interaction between these residues and a prospective substrate molecule has a significant effect on the substrate specificity of the enzyme. In an attempt to modify the specificity in favour of larger substrates, three mutant enzymes have been produced: A198G, L230A and the double mutant A198G/L230A. As a means of quantifying the overall kinetic effect of a mutation, substrate-specificity profiles were produced from steady-state experiments with (S)-2-hydroxy acids of increasing chain length, through which the catalytic efficiency of each mutant enzyme with each substrate could be compared with the corresponding wild-type efficiency. The Ala-198-->Gly mutation had little influence on substrate specificity and caused a general decrease in enzyme efficiency. However, the Leu-230-->Ala mutation caused the selectivity for 2-hydroxyoctanoate over lactate to increase by a factor of 80.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine
  • Amino Acid Sequence
  • Base Sequence
  • Binding Sites
  • Glycine
  • Kinetics
  • L-Lactate Dehydrogenase (Cytochrome)
  • L-Lactate Dehydrogenase / chemistry
  • L-Lactate Dehydrogenase / genetics
  • L-Lactate Dehydrogenase / metabolism*
  • Lactates / metabolism
  • Lactic Acid
  • Leucine
  • Models, Molecular
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Saccharomyces cerevisiae / enzymology*
  • Structure-Activity Relationship
  • Substrate Specificity

Substances

  • Lactates
  • Lactic Acid
  • L-Lactate Dehydrogenase
  • L-Lactate Dehydrogenase (Cytochrome)
  • Leucine
  • Alanine
  • Glycine