Measurement of the beta-sheet-forming propensities of amino acids

Nature. 1994 Feb 17;367(6464):660-3. doi: 10.1038/367660a0.

Abstract

Several model systems have been used to evaluate the alpha-helical propensities of different amino acids. In contrast, experimental quantitation of beta-sheet preferences has been addressed in only one model system, a zinc-finger peptide. Here we measure the relative propensity for beta-sheet formation of the twenty naturally occurring amino acids in a variant of the small, monomeric, beta-sheet-rich, IgG-binding domain from protein G. Amino-acid substitutions were made at a guest site on the solvent-exposed surface of the beta-sheet. Several criteria were used to establish that the mutations did not cause significant structural changes: binding to the Fc domain of IgG, calorimetric unfolding and NMR spectroscopy. Characterization of the terminal stabilities of these proteins leads to a thermodynamic scale for beta-sheet propensities that spans a range of approximately 2 kcal mol-1 for the naturally occurring amino acids, excluding proline. The magnitude of the differences suggests that beta-sheet preferences can be important determinants of protein stability.

MeSH terms

  • Amino Acids / chemistry*
  • Calorimetry, Differential Scanning
  • Circular Dichroism
  • Immunoglobulin Fc Fragments / metabolism
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Mutagenesis, Site-Directed
  • Nerve Tissue Proteins / chemistry
  • Protein Binding
  • Protein Structure, Secondary*
  • Thermodynamics

Substances

  • Amino Acids
  • G-substrate
  • Immunoglobulin Fc Fragments
  • Nerve Tissue Proteins