Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli

Mol Gen Genet. 1994 Jun 3;243(5):525-31. doi: 10.1007/BF00284200.


The nucleotide sequence of the 5' upstream region of the Escherichia coli rpoS gene was determined and analyzed. At least four promoters responsible for rpoS transcription were identified, and designated P1, P2, P3 and P4, P1 being furthest from the upstream. Using lacZ fusion genes, the P2 promoter was found to be the strongest of the four. All of these promoters are regulated similarly, and their activity is enhanced 2 to 3-fold in stationary phase. P1 and P2 transcription start sites were determined by primer extension analyses. The P2 promoter region shows similarity to the consensus sigma 70-type promoter sequence, and was recognized by both E sigma 70 and E sigma 38 holoenzymes in vitro. The mRNA transcribed from the most distal promoter, P1, appears to include another open reading frame (orf-281), indicating that the two open reading frames comprise an operon. The rpoS gene product (sigma 38) was rapidly degraded after addition of chloramphenicol to cultures in the exponential, but not the stationary phase. This strongly suggests that posttranslational regulation is involved in the control of rpoS expression.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / biosynthesis*
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics*
  • Base Sequence
  • Chloramphenicol / pharmacology
  • Escherichia coli / genetics*
  • Gene Expression Regulation, Bacterial* / drug effects
  • Genes, Bacterial*
  • Molecular Sequence Data
  • Open Reading Frames
  • Operon
  • Polymerase Chain Reaction
  • Promoter Regions, Genetic
  • Protein Biosynthesis
  • Restriction Mapping
  • Sequence Analysis, DNA
  • Sequence Analysis, RNA
  • Sigma Factor / biosynthesis*
  • Sigma Factor / chemistry
  • Sigma Factor / genetics*


  • Bacterial Proteins
  • Sigma Factor
  • sigma factor KatF protein, Bacteria
  • Chloramphenicol

Associated data

  • GENBANK/D13548
  • GENBANK/D17549