SnoI, a novel alternatively spliced isoform of the ski protooncogene homolog, sno

Nucleic Acids Res. 1993 Sep 25;21(19):4632-8. doi: 10.1093/nar/21.19.4632.

Abstract

We have cloned and sequenced a novel human isoform of sno, snoI for insertion. SnoI contains 1330 nucleotides inserted in place of 7 nucleotides of the snoN mRNA. Sno is a member of the ski protooncogene family, which has been implicated in muscle development. The two previously known sno alternatively spliced isoforms are snoN (684 amino acids), and snoA (415 amino acids); snoI encodes a truncated isoform of 399 amino acids (44,298 MW). Southern blot experiments show that snoI contains a third alternative exon from the sno gene; a single sno gene can express all three isoforms of sno by alternative splicing. All three isoforms contain the region that is most similar to the ski proto-oncogene. The relationship between snoI and snoN is analogous to that between delta fosB and fosB, where a truncated form of the fosB transcription factor is produced by alternative splicing. We find conservation of human snoI-specific sequences in several mammalian species, in monkey, dog, cow, rabbit and pig, but not in rodents, whereas the common portion of the sno gene is conserved in all vertebrate species tested. SnoN, snoA, and ski mRNAs accumulate in many human tissues including skeletal muscle; the snoI alternative mRNA accumulates more specifically in skeletal muscle. SnoI is also expressed in rhabdomyosarcoma tumor, a tumor that contains differentiated skeletal muscle. The tissue-specific alternative splicing of human snoI, an mRNA in the ski/sno gene family, and the presence of sno mRNAs in muscle are consistent with a proposed role for the sno oncogene in muscle gene regulation.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alternative Splicing
  • Amino Acid Sequence
  • Base Sequence
  • Cloning, Molecular
  • DNA Primers / chemistry
  • Gene Expression
  • Genes
  • Humans
  • Intracellular Signaling Peptides and Proteins
  • Molecular Sequence Data
  • Muscle Proteins / genetics*
  • Proteins / genetics*
  • Proto-Oncogene Proteins*
  • RNA, Messenger / genetics
  • Restriction Mapping
  • Transcription Factors / genetics*

Substances

  • DNA Primers
  • Intracellular Signaling Peptides and Proteins
  • Muscle Proteins
  • Proteins
  • Proto-Oncogene Proteins
  • RNA, Messenger
  • SKIL protein, human
  • Transcription Factors

Associated data

  • GENBANK/Z19588