Genomic distribution and transcription of solitary HERV-K LTRs

Genomics. 1993 Nov;18(2):261-9. doi: 10.1006/geno.1993.1464.

Abstract

The human genome contains a family of endogenous retroviruses, HERV-K, with sequence homology to the B-type mouse mammary tumor virus. We have now identified a single HERV-K LTR within the C-type-related human retroviral element S71. The HERV-K LTR is located in the antisense direction between the S71 gag and the pol gene, replacing the 5' half of S71 pol. A number of HERV-K LTR-related cDNA clones were detected by screening various human cDNA libraries with an S71 HERV-K LTR probe, indicating abundant transcription of HERV-K-related LTRs in human tissues. Sequence analysis of four cDNA clones revealed LTR sequences with a nucleotide identity of 70 to 90% with HERV-K10 LTR. Some HERV-K-related LTR sequences contain potential short open reading frames. The analyzed cDNA clones do not harbor any retroviral sequences other than those related to HERV-K LTRs. However, most of the solitary LTRs were found to be coexpressed with cellular sequences. Transcription of these LTRs is probably directed by external cellular promoters. We show that HERV-KLTR-like sequences entered the primate genome about 33-40 million years ago. We estimate the human genome to contain about 25,000 copies of HERV-K-related LTRs, which are distributed over most human chromosomes in an irregular manner.

MeSH terms

  • Animals
  • Base Sequence
  • Cricetinae
  • Cricetulus
  • DNA
  • DNA, Viral / analysis
  • Genome, Human*
  • Humans
  • Hybrid Cells
  • Molecular Sequence Data
  • Repetitive Sequences, Nucleic Acid*
  • Restriction Mapping
  • Retroviridae / genetics*
  • Sequence Homology, Nucleic Acid
  • Transcription, Genetic*

Substances

  • DNA, Viral
  • DNA