Inhibition of translational initiation in Saccharomyces cerevisiae by secondary structure: the roles of the stability and position of stem-loops in the mRNA leader

Mol Microbiol. 1993 Aug;9(3):521-32. doi: 10.1111/j.1365-2958.1993.tb01713.x.

Abstract

A new modular gene-expression system for use in studies of translational control in Saccharomyces cerevisiae was constructed. A GAL::PGK fusion promoter (GPF) directed the inducible synthesis of mRNAs initiated at a single major site. A series of leader sequences were tested in combination with each of two reporter genes (encoding chloramphenicol acetyl transferase (cat) and luciferase (luc)). Stem-loop structures of three different sizes and predicted stabilities were inserted into each of two different unique restriction sites in the leader. After correction for relative mRNA abundance, a stem-loop of predicted stability equivalent to approximately -18 kcal mol-1 inhibited translation by up to 89%. The degree of inhibition exerted by the other stem-loops correlated positively with their predicted stabilities. Combinations of two stem-loops at different sites yielded an inhibitory effect greater than that of either individual stem-loop alone. Similar inhibitory effects were observed with both reporter genes. However, inhibition of translation, particularly of the cat gene, was more effective when the stem-loop was positioned close to the start codon rather than at the 5' end of the leader. The observed results reflect an important form of post-transcriptional control that is expected to act on a large number of genes in yeast.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Chloramphenicol O-Acetyltransferase / biosynthesis
  • Enzyme Induction / genetics
  • Gene Expression Regulation, Fungal*
  • Genes, Reporter
  • Luciferases / biosynthesis
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Peptide Chain Initiation, Translational / genetics*
  • Plasmids / genetics
  • Promoter Regions, Genetic / genetics
  • RNA, Messenger / genetics*
  • Recombinant Fusion Proteins / biosynthesis
  • Saccharomyces cerevisiae / genetics*

Substances

  • RNA, Messenger
  • Recombinant Fusion Proteins
  • Luciferases
  • Chloramphenicol O-Acetyltransferase