DNase I and micrococcal nuclease analysis of the tomato proteinase inhibitor I gene in chromatin

J Biol Chem. 1993 Jan 5;268(1):430-5.

Abstract

The chromatin structure of the wound-inducible proteinase inhibitor I gene was investigated in nuclei from leaves of wounded and unwounded tomato plants. DNase I digestion of intact nuclei revealed that the inhibitor I chromatin structure was highly sensitive to the enzyme compared to the inactive ribosomal chromatin. This sensitivity was independent of wounding. Digestion of tomato nuclei with micrococcal nuclease, which produces a nucleosomal ladder from bulk chromatin in agarose gels, supported these observations. Micrococcal nuclease produced only a faint nucleosomal repeat superimposed on a smear for the coding region of the inhibitor I gene, whereas digestion of inactive ribosomal chromatin produced a well defined nucleosomal ladder. Two DNase I-hypersensitive sites were found in the promoter region of the inhibitor I gene. Both were present before and after wound induction. These two constitutive DNase I-hypersensitive sites may correspond to DNA regulatory regions of the gene. The combined results indicate the existence of an open chromatin conformation in the inhibitor I gene DNA region, present before gene induction by wounding.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Cell Fractionation
  • Cell Nucleus / physiology
  • Cell Nucleus / ultrastructure
  • Centrifugation, Density Gradient
  • Chromatin / physiology*
  • DNA / genetics
  • DNA / isolation & purification
  • Deoxyribonuclease I
  • Genes, Plant*
  • Micrococcal Nuclease
  • Plant Proteins / genetics*
  • Promoter Regions, Genetic
  • Protease Inhibitors / metabolism
  • RNA, Messenger / genetics
  • RNA, Messenger / isolation & purification
  • RNA, Messenger / metabolism
  • Restriction Mapping
  • Transcription, Genetic

Substances

  • Chromatin
  • Plant Proteins
  • Protease Inhibitors
  • RNA, Messenger
  • proteinase inhibitor I (plants)
  • DNA
  • Deoxyribonuclease I
  • Micrococcal Nuclease