Relatedness of an RNA-binding motif in human immunodeficiency virus type 1 TAR RNA-binding protein TRBP to human P1/dsI kinase and Drosophila staufen

Mol Cell Biol. 1993 Apr;13(4):2193-202. doi: 10.1128/mcb.13.4.2193-2202.1993.

Abstract

TRBP is a human cellular protein that binds the human immunodeficiency virus type 1 TAR RNA. Here, we show that the intact presence of amino acids 247 to 267 in TRBP correlates with its ability to bind RNA. This region contains a lysine- and arginine-rich motif, KKLAKRNAAAKMLLRVHTVPLDAR. A 24-amino-acid synthetic peptide (TR1) of this sequence bound TAR RNA with affinities similar to that of the entire TRBP, thus suggesting that this short motif contains a sufficient RNA-binding activity. Using RNA probe-shift analysis, we determined that TR1 does not bind all double-stranded RNAs but prefers TAR and other double-stranded RNAs with G+C-rich characteristics. Immunoprecipitation of TRBP from human immunodeficiency virus type 1-infected T lymphocytes recovered TAR RNA. This is consistent with a TRBP-TAR ribonucleoprotein during viral infection. Computer alignment revealed that TR1 is highly homologous to the RNA-binding domain of human P1/dsI protein kinase and two regions within Drosophila Staufen. We suggest that these proteins are related by virtue of sharing a common RNA-binding moiety.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Consensus Sequence
  • DNA Mutational Analysis
  • Genes
  • HIV-1 / genetics*
  • HeLa Cells
  • Humans
  • Hydrogen Bonding
  • Molecular Sequence Data
  • Peptides / chemistry
  • Peptides / metabolism
  • RNA, Viral / metabolism*
  • RNA, Viral / ultrastructure
  • RNA-Binding Proteins / genetics*
  • Sequence Alignment
  • Sequence Deletion
  • T-Lymphocytes / metabolism
  • T-Lymphocytes / microbiology
  • Trans-Activation Responsive RNA-Binding Protein

Substances

  • Peptides
  • RNA, Viral
  • RNA-Binding Proteins
  • Trans-Activation Responsive RNA-Binding Protein

Associated data

  • GENBANK/M35663
  • GENBANK/M60725
  • GENBANK/M60801
  • GENBANK/M69111
  • GENBANK/M85294
  • GENBANK/M96370
  • GENBANK/X02946