The biosynthetic pathway of the aminonucleoside antibiotic puromycin, as deduced from the molecular analysis of the pur cluster of Streptomyces alboniger

J Biol Chem. 1996 Jan 19;271(3):1579-90. doi: 10.1074/jbc.271.3.1579.

Abstract

The pur cluster which encodes the puromycin biosynthetic pathway from Streptomyces alboniger was subcloned as a 13-kilobase fragment in plasmid pIJ702 and expressed in an apparently regulated manner in the heterologous host Streptomyces lividans. The sequencing of a 9.1-kilobase DNA fragment completed the sequence of pur. This permitted identification of seven new open reading frames in the order: napH, pur7, pur10, pur6, pur4, pur5, and pur3. The latter is followed by the known pac, dmpM, and pur8 genes. Nine open reading frames are transcribed rightward as a unit in opposite direction to that of the pur8 gene which is expressed as a monocistronic transcript from the right-most end. napH encodes the known N-acetylpuromycin N-acetylhydrolase. The deduced products from other open reading frames present similarities to: NTP pyrophosphohydrolases (pur7), several oxidoreductases (pur10), the putative LmbC protein of the lincomycin biosynthetic pathway from Streptomyces lincolnensis (pur6), S-adenosylmethionine-dependent methyltransferases (pur5), a variety of presumed aminotransferases (pur4), and several monophosphatases (pur3). According to these similarities and to previous biochemical work, a puromycin biosynthetic pathway has been deduced. No cluster-associated regulatory gene was found. However, both pur10 and pur6 genes contain a TTA codon, which suggests that they are translationally controlled by the bldA gene product, a specific tRNA(Leu).

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Anti-Bacterial Agents / biosynthesis*
  • Base Sequence
  • Genes, Bacterial*
  • Molecular Sequence Data
  • Multigene Family*
  • Open Reading Frames
  • Plasmids
  • Puromycin / biosynthesis*
  • RNA, Bacterial / biosynthesis
  • Restriction Mapping
  • Sequence Homology, Amino Acid
  • Streptomyces / genetics*
  • Streptomyces / metabolism*
  • Transcription, Genetic*

Substances

  • Anti-Bacterial Agents
  • RNA, Bacterial
  • Puromycin

Associated data

  • GENBANK/L07247
  • GENBANK/L07263
  • GENBANK/L25276
  • GENBANK/L35560
  • GENBANK/M74072
  • GENBANK/M87509
  • GENBANK/P28637
  • GENBANK/U08092
  • GENBANK/U10405
  • GENBANK/X51891
  • GENBANK/X60379
  • GENBANK/X79146
  • GENBANK/X92429
  • GENBANK/Z19590
  • SWISSPROT/P28637