A repair competition assay to assess recognition by human nucleotide excision repair

Nucleic Acids Res. 1996 Mar 1;24(5):824-8. doi: 10.1093/nar/24.5.824.

Abstract

We developed a competition assay to compare, in a quantitative manner, the ability of human nucleotide excision repair (NER) to recognise structurally different forms of DNA damage. This assay uses a NER substrate consisting of M13 double-stranded DNA with a single and uniquely located acetylaminofluorene (AAF) adduct, and measures the efficiency by which multiply damaged plasmid DNA competes for excision repair of the site-directed modification. To validate this assay, we tested competitor DNA containing defined numbers of either AAF adducts or UV radiation products. In both cases, repair of the site-directed NER substrate was inhibited in a damage-specific and dose-dependent manner. We then exploited this competition assay to determine the susceptibility of bulky adozelesin-DNA adducts to human NER.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Benzofurans
  • Binding, Competitive
  • Cyclohexanecarboxylic Acids
  • Cyclohexenes
  • DNA Damage*
  • DNA Repair*
  • Duocarmycins
  • Humans
  • Indoles*
  • Molecular Probe Techniques
  • Molecular Sequence Data

Substances

  • Benzofurans
  • Cyclohexanecarboxylic Acids
  • Cyclohexenes
  • Duocarmycins
  • Indoles
  • adozelesin