Sequence analysis of the human DNA flanking sites of human immunodeficiency virus type 1 integration

J Virol. 1996 Sep;70(9):6459-62. doi: 10.1128/JVI.70.9.6459-6462.1996.

Abstract

Human immunodeficiency virus type 1 (HIV-1) tagged with the Escherichia coli supF gene has been used to clone integrated HIV-1 proviruses. Sequence analysis of the 600 to 800 bp of human DNA adjacent to 29 clones revealed a propensity for HIV-1 to integrate near the Alu class of human repetitive elements.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Bacteriophage lambda / genetics
  • Base Sequence
  • Cloning, Molecular
  • Consensus Sequence
  • DNA / chemistry
  • DNA / genetics*
  • DNA, Viral / genetics
  • Escherichia coli / genetics
  • Gene Deletion
  • Genes, Bacterial
  • Genes, Suppressor
  • Genes, nef
  • HIV-1 / genetics*
  • Humans
  • Molecular Sequence Data
  • Proviruses / genetics
  • RNA, Transfer / biosynthesis
  • Repetitive Sequences, Nucleic Acid*
  • Virus Integration*

Substances

  • DNA, Viral
  • supF tRNA
  • DNA
  • RNA, Transfer

Associated data

  • GENBANK/H11552