Sequence-specific DNA binding of the B-cell-specific coactivator OCA-B

Genes Dev. 1996 Aug 15;10(16):2079-88. doi: 10.1101/gad.10.16.2079.

Abstract

B-cell-specific transcription of immunoglobulin genes is mediated by the interaction of a POU domain containing transcription factor Oct-1 or Oct-2, with the B-cell-specific coactivator OCA-B (Bob-1, OBF-1) and a prototype octamer element. We find that OCA-B binds DNA directly in the major groove between the two subdomains of the POU domain, requiring both an A at the fifth position of the octamer element and contact with the POU domain. An amino-terminal fragment of OCA-B binds the octamer site in the absence of a POU domain with the same sequence specificity. Coactivator OCA-B may undergo a POU-dependent conformational change that exposes its amino terminus, allowing it to recognize specific DNA sequences in the major groove within the binding site for Oct-1 or Oct-2. The recognition of both the POU domain and the octamer sequence by OCA-B provides a mechanism for differential regulation of octamer sites containing genes by the ubiquitous factor Oct-1.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • B-Lymphocytes / physiology*
  • Base Sequence
  • Binding Sites
  • Cell Line
  • Cell-Free System
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / metabolism*
  • Homeodomain Proteins / chemistry
  • Homeodomain Proteins / metabolism*
  • Host Cell Factor C1
  • Humans
  • Macromolecular Substances
  • Models, Molecular
  • Octamer Transcription Factor-1
  • Promoter Regions, Genetic*
  • Structure-Activity Relationship
  • Trans-Activators / chemistry*
  • Trans-Activators / metabolism*
  • Transcription Factors / chemistry
  • Transcription Factors / metabolism*

Substances

  • DNA-Binding Proteins
  • HCFC1 protein, human
  • Homeodomain Proteins
  • Host Cell Factor C1
  • Macromolecular Substances
  • Octamer Transcription Factor-1
  • POU2AF1 protein, human
  • POU2F1 protein, human
  • Trans-Activators
  • Transcription Factors