TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins

J Comput Biol. Fall 1994;1(3):191-8. doi: 10.1089/cmb.1994.1.191.

Abstract

DNA sequences that are involved in the control of gene expression in eukaryotes have been collected in conjunction with the proteins binding to and acting through them (TRANSFAC data set). To make these data accessible, the TRANSFAC retrieval program (TRP) has been developed as a database management system which is based upon the network model. This database model possesses particular advantages for data management of a complex structure. The aim of TRP is to provide an easily handled statistical basis for a computational approach to transcription control.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Database Management Systems*
  • Databases, Factual*
  • Regulatory Sequences, Nucleic Acid*
  • Transcription Factors*
  • Transcription, Genetic*
  • User-Computer Interface

Substances

  • Transcription Factors