Differences in the magnesium dependences of the class I and class II aminoacyl-tRNA synthetases from Escherichia coli

Eur J Biochem. 1996 Aug 15;240(1):223-31. doi: 10.1111/j.1432-1033.1996.0223h.x.

Abstract

The magnesium dependences of the ATP/PPi exchange and tRNA aminoacylation of reactions were measured for six aminoacyl-tRNA synthetases (isoleucyl-, tyrosyl- and arginyl-tRNA synthetases from class I, and histidyl-, lysyl- and phenylalanyl-tRNA synthetases from class II). The measured values were subjected to best-fit analyses using sum square error calculations between the data and the calculated curves in order to find the mode of participation of the Mg2+ and to optimize the sets of the kinetic constants. The following four dependences were observed: the class II synthetases require three Mg2+ for the activation reaction (including the one in MgATP), but the class I synthetases require only one Mg2+ (in MgATP); in class II synthetases both MgPPi and Mg2PPi participate in the pyrophosphorolysis of the aminoacyl adenylate. Arginyl-tRNA synthetase from class I also shows a better fit if also Mg2PPi reacts, but in the isoleucyl- and tyrosyl-tRNA synthetases only MgPPi but not Mg2PPi is used in the pyrophosphorolysis. Different synthetases have different requirements for the tRNA-bound Mg2+ and spermidine, independent of the enzyme class. 1-4 Mg2+ or spermidines are required in the best fit models. At the end of the reaction in all the synthetases analysed the dissociation of Mg2+ from the product aminoacyl-tRNA essentially enhances the subsequent dissociation of the aminoacyl-tRNA from the enzyme. The binding of ATP to the E. aminoacyl-tRNA complex also speeds up the dissociation of the aminoacyl-tRNA from most of these enzymes.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acyl-tRNA Synthetases / classification
  • Amino Acyl-tRNA Synthetases / isolation & purification
  • Amino Acyl-tRNA Synthetases / metabolism*
  • Arginine-tRNA Ligase / metabolism
  • Escherichia coli / enzymology*
  • Histidine-tRNA Ligase / metabolism
  • Isoleucine-tRNA Ligase / metabolism
  • Kinetics
  • Lysine-tRNA Ligase / metabolism
  • Magnesium / pharmacology*
  • Models, Chemical
  • Phenylalanine-tRNA Ligase / metabolism
  • Spermidine / pharmacology
  • Tyrosine-tRNA Ligase / metabolism

Substances

  • Amino Acyl-tRNA Synthetases
  • Tyrosine-tRNA Ligase
  • Arginine-tRNA Ligase
  • Phenylalanine-tRNA Ligase
  • Histidine-tRNA Ligase
  • Isoleucine-tRNA Ligase
  • Lysine-tRNA Ligase
  • Magnesium
  • Spermidine