Molecular cloning of higher plant homologues of the high-affinity nitrate transporters of Chlamydomonas reinhardtii and Aspergillus nidulans

Gene. 1996 Oct 10;175(1-2):223-31. doi: 10.1016/0378-1119(96)00154-0.


The crnA nitrate transporter from Aspergillus nidulans was identified as belonging to the major facilitator superfamily (MFS) of membrane transporters. Degenerate oligonucleotides corresponding to the crnA sequences at the locations of two conserved sequence motifs were designed and used in the polymerase chain reaction (PCR) to amplify related sequences from barley root poly(A)+ RNA. A 130 bp cDNA fragment with sequence similarities to crnA was amplified and used as a probe to screen a barley root cDNA library. Two full-length clones (pBCH1 and pBCH2) were isolated. The nt sequences of pBHC1 and pBCH2 are closely related (80% identical) and potentially encode hydrophobic polypeptides of 54.7 and 55.0 kDa respectively, with twelve predicted transmembrane domains. The encoded polypeptides are 41-43% identical to the A. nidulans CRNA protein and 56-57% identical to NAR-3, a high-affinity nitrate transporter from the eukaryotic alga Chlamydomonas reinhardtii. Phylogenetic analysis indicated that crnA, nar-3 and the barley homologues belong to a new family within the MFS, a family that also includes narK, the gene for a nitrite efflux pump in Escherichia coli. In northern blots, BCH1 hybridised to a mRNA species of 1.9 kb which is rapidly induced in barley roots by NO3-, but not by NH4+, and genomic Southern blots indicated that there may be seven to ten BCH1-related genes in the barley genome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Anion Transport Proteins*
  • Aspergillus nidulans / genetics
  • Bacterial Proteins / genetics
  • Base Sequence
  • Carrier Proteins / genetics*
  • Chlamydomonas reinhardtii / genetics
  • Cloning, Molecular
  • Hordeum / chemistry
  • Hordeum / genetics*
  • Molecular Sequence Data
  • Plant Proteins / genetics*
  • Polymerase Chain Reaction
  • Sequence Alignment
  • Sequence Homology, Amino Acid


  • Anion Transport Proteins
  • Bacterial Proteins
  • Carrier Proteins
  • Plant Proteins
  • nitrate transporters

Associated data

  • GENBANK/U34198
  • GENBANK/U34290