Cloning and nucleotide sequence of a D,L-haloalkanoic acid dehalogenase encoding gene from Alcaligenes xylosoxidans ssp. denitrificans ABIV

Biodegradation. 1996;7(5):383-96. doi: 10.1007/BF00056422.

Abstract

We have cloned DNA fragments of plasmid pFL40 from Alcaligenes xylosoxidans ssp. denitrificans ABIV encoding a D,L-2-haloalkanoic acid halidohydrolase (DhlIV). A 6.5-kb EcoRI/SalI-fragment with inducible expression of the halidohydrolase was cloned in Pseudomonas fluorescens and Escherichia coli. A 1.9-kb HindII-fragment demonstrated expression of the dehalogenase only due to the presence of the promoter from the pUC vector in Escherichia coli. The nucleotide sequence of this DNA-fragment was determined. It had an open reading frame coding for 296 amino acid residues (molecular weight of 32783 D). The dhlIV gene showed sequence homology to a short segment of a D-specific dehalogenase (hadD) from Pseudomonas putida AJ1, but not to any other known DNA sequences. Restriction enzyme patterns indicated similarity between dhlIV and the D,L- isomer specific dehl dehalogenase gene from Pseudomonas putida PP3. There are some indications from restriction enzyme patterns and initial sequencing data, that a gene encoding a sigma 54-dependent activator protein, similar to the dehRI regulatory gene from Pseudomonas putida PP3 is located upstream of dhlIV. In contrast to DehI, dehalogenation of D- or L-chloropropionic acid by the DhlIV-protein leads to lactic acid of inverted configuration.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alcaligenes / enzymology
  • Alcaligenes / genetics*
  • Amino Acid Sequence
  • Base Composition
  • Base Sequence
  • Cloning, Molecular
  • Enzyme Inhibitors / pharmacology
  • Escherichia coli / genetics
  • Gene Expression Regulation, Bacterial
  • Genes, Bacterial*
  • Genes, Regulator
  • Hydrolases / chemistry
  • Hydrolases / genetics*
  • Hydrolases / metabolism
  • Kinetics
  • Molecular Sequence Data
  • Molecular Weight
  • Plasmids
  • Pseudomonas fluorescens / genetics
  • Restriction Mapping
  • Sequence Homology, Nucleic Acid
  • Stereoisomerism
  • Sulfhydryl Reagents / pharmacology

Substances

  • Enzyme Inhibitors
  • Sulfhydryl Reagents
  • Hydrolases
  • 2-haloacid dehalogenase

Associated data

  • GENBANK/X77610