Small-molecule-substrate interactions with a self-aminoacylating ribozyme

J Mol Biol. 1997 May 9;268(3):631-9. doi: 10.1006/jmbi.1997.0988.

Abstract

A self-aminoacylating RNA catalyst is shown to carry out the chemistry required for turnover, being reacylated several times from aminoacyl-AMP with an unaltered rate, thereby meeting one definition of an enzyme. Furthermore, a newly applied gel electrophoresis assay suggests first order kinetics in RNA and saturation kinetics in the substrate aminoacyl-adenylate, implying a Michaelis complex. AMP is a competitive inhibitor, though phenylalanine is not detectably inhibitory, consistent with a Michaelis complex through the AMP moiety of phenylalanyl-adenylate substrate. This idea is supported by measurement of elevated acylation velocities with seryl and alanyl-adenylates. The rate of aminoacylation increases with pH, consistent with attack of a terminal ribose oxyanion on the carbonyl carbon atom of the adenylate.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Acylation
  • Adenosine Monophosphate / analogs & derivatives
  • Adenosine Monophosphate / chemistry
  • Adenosine Monophosphate / metabolism*
  • Amino Acids / chemistry*
  • Catalysis
  • Electrophoresis, Polyacrylamide Gel / methods
  • Hydrogen-Ion Concentration
  • Kinetics
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • RNA, Catalytic / chemistry
  • RNA, Catalytic / metabolism*
  • Sodium Chloride / pharmacology

Substances

  • Amino Acids
  • RNA, Catalytic
  • Adenosine Monophosphate
  • Sodium Chloride
  • phenylalanyl-5'-AMP