The amino-terminal 118 amino acids of Escherichia coli trigger factor constitute a domain that is necessary and sufficient for binding to ribosomes

J Biol Chem. 1997 Aug 29;272(35):21865-71. doi: 10.1074/jbc.272.35.21865.

Abstract

Escherichia coli trigger factor has prolyl-isomerase and chaperone activities and associates with nascent polypeptide chains. Trigger factor has a binding site on ribosomes, which is a prerequisite for its efficient association with nascent chains and its proposed function as a cotranslational folding catalyst. We set out to identify the domain of trigger factor that mediates ribosome binding. Of a series of recombinant fragments, the amino-terminal fragments, TF (1-144) and TF (1-247), cofractionated with ribosomes from cell extracts and rebound to isolated ribosomes in vitro. They competed efficiently with full-length trigger factor for stoichiometric binding to a single site on the large ribosomal subunit. However, TF (1-144) and TF (1-247) differed from full-length trigger factor in that their association with ribosomes was not strengthened by the presence of nascent chains, indicating a role for carboxyl-terminal trigger factor segment in sensing the translational status. The domain responsible for ribosome binding was further investigated by limited proteolysis of recombinant fragments. A stable domain comprising the amino-terminal 118 residues was identified that was still capable of ribosome binding and thus represents a novel structural and functional element of trigger factor.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Isomerases / chemistry
  • Amino Acid Isomerases / metabolism*
  • Bacterial Proteins / metabolism*
  • Binding Sites
  • Carrier Proteins / chemistry
  • Carrier Proteins / metabolism*
  • Endodeoxyribonucleases / metabolism*
  • Escherichia coli / drug effects
  • Escherichia coli / enzymology*
  • Peptide Fragments / isolation & purification
  • Peptide Mapping
  • Peptidylprolyl Isomerase
  • Protein Biosynthesis
  • Protein Folding
  • Puromycin / pharmacology
  • Ribosomes / metabolism*
  • Sodium Chloride / pharmacology

Substances

  • Bacterial Proteins
  • Carrier Proteins
  • Peptide Fragments
  • Sodium Chloride
  • Puromycin
  • Endodeoxyribonucleases
  • Amino Acid Isomerases
  • Peptidylprolyl Isomerase